Original Articles（2009）

• Kinoshita K and Obayashi T. Multi-dimensional correlations for gene coexpression and application to the large-scale data of Arabidopsis. Bioinformatics, 2009 Oct 15;25(20):2677-84 PubMed Journal
• Obayashi T and Kinoshita K. Rank of correlation coefficient as a comparable measure for biological significance of gene coexpression. DNA Res, 2009 Oct;16(5):249-60 PubMed Journal
• Shirota M, Ishida T and Kinoshita K. Development of a new meta-score for protein structure prediction from seven all-atom distance dependent potentials using support vector regression. Genome Inform, 2009 Oct;23(1):149-58 PubMed
• Shirota M, Ishida T and Kinoshita K. Analyses on hydrophobicity and attractiveness of all-atom distance-dependent potentials. Protein Sci, 2009 Sep;18(9):1906-15 PubMed Journal
• Maeda MH and Kinoshita K. Development of new indices to evaluate protein-protein interfaces: assembling space volume, assembling space distance, and global shape descriptor. J Mol Graph Model, 2009 Feb;27(6):706-11 PubMed Journal
• Ikura T, Kinoshita K and Ito N. [Correlation between structure and function of peptidyl-prolyl isomerase]. Tanpakushitsu Kakusan Koso, 2009 Feb;54(2):167-72 PubMed
• Tsuchiya Y, Kanamori E, Nakamura H and Kinoshita K. Classification of heterodimer interfaces using docking models and construction of scoring functions for the complex structure prediction. Adv Appl Bioinform Chem, 2009;2:79-100 PubMed
• Obayashi T, Hayashi S, Saeki M, Ohta H and Kinoshita K. ATTED-II provides coexpressed gene networks for Arabidopsis. Nucleic Acids Res, 2009 Jan;37(Database issue):D987-91 PubMed Journal
• Higurashi M, Ishida T and Kinoshita K. PiSite: a database of protein interaction sites using multiple binding states in the PDB. Nucleic Acids Res, 2009 Jan;37(Database issue):D360-4 PubMed Journal