Publications(2009)

1. Multi-dimensional correlations for gene coexpression and application to the large-scale data of Arabidopsis.
   Kinoshita K, Obayashi T.
   Bioinformatics. 2009 Jul 20. [Epub ahead of print]
   PMID: 19620096 [PubMed – as supplied by publisher]
   Related Articles Free article at journal site
2. Rank of Correlation Coefficient as a Comparable Measure for Biological Significance of Gene Coexpression.
   Obayashi T, Kinoshita K.
   DNA Res. 2009 Sep 18. [Epub ahead of print]
   PMID: 19767600 [PubMed – as supplied by publisher]
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3. Development of a new meta-score for protein structure prediction from seven all-atom distance dependent potentials using support vector regression.
   Shirota M, Ishida T, Kinoshita K.
   Genome Inform. 2009 Oct;23(1):149-58.
   PMID: 20180270 [PubMed – indexed for MEDLINE]
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4. Analyses on hydrophobicity and attractiveness of all-atom distance-dependent potentials.
   Shirota M, Ishida T, Kinoshita K.
   Protein Sci. 2009 Sep;18(9):1906-15.
   PMID: 19588493 [PubMed – in process]
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5. Development of new indices to evaluate protein-protein interfaces: assembling space volume, assembling space distance, and global shape descriptor.
   Maeda MH, Kinoshita K.
   J Mol Graph Model. 2009 Feb;27(6):706-11. Epub 2008 Nov 8.
   PMID: 19110457 [PubMed – indexed for MEDLINE]
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6. [Correlation between structure and function of peptidyl-prolyl isomerase]
   Ikura T, Kinoshita K, Ito N.
   Tanpakushitsu Kakusan Koso. 2009 Feb;54(2):167-72. Review. Japanese. No abstract available.
   PMID: 19205352 [PubMed – indexed for MEDLINE]
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7. Classification of heterodimer interfaces using docking models and construction of scoring functions for the complex structure prediction.
   Tsuchiya Y, Kanamori E, Nakamura H, Kinoshita K..
   Adv Appl Bioinform Chem. 2009;2:79-100. Epub 2009 Sep 22
   PMID: 21918618 [PubMed – in process]
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8. ATTED-II provides coexpressed gene networks for Arabidopsis.
   Obayashi T, Hayashi S, Saeki M, Ohta H, Kinoshita K.
   Nucleic Acids Res. 2009 Jan;37(Database issue):D987-91. Epub 2008 Oct 25.
   PMID: 18953027 [PubMed – indexed for MEDLINE]
   Related Articles Free article in PMC | at journal site
9. PiSite: a database of protein interaction sites using multiple binding states in the PDB.
   Higurashi M, Ishida T, Kinoshita K.
   Nucleic Acids Res. 2009 Jan;37(Database issue):D360-4. Epub 2008 Oct 4.
   PMID: 18836195 [PubMed – indexed for MEDLINE]
   Related Articles Free article in PMC | at journal site