Publications(2009)

  1. Multi-dimensional correlations for gene coexpression and application to the large-scale data of Arabidopsis.
    Kinoshita K, Obayashi T.
    Bioinformatics. 2009 Jul 20. [Epub ahead of print]
    PMID: 19620096 [PubMed – as supplied by publisher]
    Related Articles Free article at journal site
  2. Rank of Correlation Coefficient as a Comparable Measure for Biological Significance of Gene Coexpression.
    Obayashi T, Kinoshita K.
    DNA Res. 2009 Sep 18. [Epub ahead of print]
    PMID: 19767600 [PubMed – as supplied by publisher]
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  3. Development of a new meta-score for protein structure prediction from seven all-atom distance dependent potentials using support vector regression.
    Shirota M, Ishida T, Kinoshita K.
    Genome Inform. 2009 Oct;23(1):149-58.
    PMID: 20180270 [PubMed – indexed for MEDLINE]
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  4. Analyses on hydrophobicity and attractiveness of all-atom distance-dependent potentials.
    Shirota M, Ishida T, Kinoshita K.
    Protein Sci. 2009 Sep;18(9):1906-15.
    PMID: 19588493 [PubMed – in process]
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  5. Development of new indices to evaluate protein-protein interfaces: assembling space volume, assembling space distance, and global shape descriptor.
    Maeda MH, Kinoshita K.
    J Mol Graph Model. 2009 Feb;27(6):706-11. Epub 2008 Nov 8.
    PMID: 19110457 [PubMed – indexed for MEDLINE]
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  6. [Correlation between structure and function of peptidyl-prolyl isomerase]
    Ikura T, Kinoshita K, Ito N.
    Tanpakushitsu Kakusan Koso. 2009 Feb;54(2):167-72. Review. Japanese. No abstract available.
    PMID: 19205352 [PubMed – indexed for MEDLINE]
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  7. Classification of heterodimer interfaces using docking models and construction of scoring functions for the complex structure prediction.
    Tsuchiya Y, Kanamori E, Nakamura H, Kinoshita K..
    Adv Appl Bioinform Chem. 2009;2:79-100. Epub 2009 Sep 22
    PMID: 21918618 [PubMed – in process]
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  8. ATTED-II provides coexpressed gene networks for Arabidopsis.
    Obayashi T, Hayashi S, Saeki M, Ohta H, Kinoshita K.
    Nucleic Acids Res. 2009 Jan;37(Database issue):D987-91. Epub 2008 Oct 25.
    PMID: 18953027 [PubMed – indexed for MEDLINE]
    Related Articles Free article in PMC | at journal site
  9. PiSite: a database of protein interaction sites using multiple binding states in the PDB.
    Higurashi M, Ishida T, Kinoshita K.
    Nucleic Acids Res. 2009 Jan;37(Database issue):D360-4. Epub 2008 Oct 4.
    PMID: 18836195 [PubMed – indexed for MEDLINE]
    Related Articles Free article in PMC | at journal site
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